May 5, 2024

Long-Puzzling Biologists: Cornell Study Reveals How Cells Prevent Harmful Extra DNA Copies

In preparation for cell division, licensing proteins bind to particular places in the DNA, marking them as replication origins. “In principle, the cell could pack these licensing machines onto DNA thats currently duplicated, so, instead of two copies, youre getting 3 or four copies of that segment of the DNA, and these cells would be expected to lose genome integrity and die or become cancerous.”

Determining how cells prevent that fate has been difficult. “We required to be studying events in the very first minutes of the DNA synthesis phase of the cell cycle, so its a very transient period,” stated first author Nalin Ratnayeke, a graduate trainee who dealt with this project both at Stanford University and at Weill Cornell Medicine in Dr. Meyers lab. The lab moved to Weill Cornell Medicine in 2020. To fix this challenging experimental problem, Ratnayeke utilized computer-aided microscopy to keep track of countless growing cells at the same time, catching the duplicating cells in the act and analyzing the activities of their licensing and replication factors.
The work exposed that a widely known licensing factor, CDT1, not only licenses a sector of DNA to become a replication origin, but also serves as a brake for DNA duplication, avoiding an important replication enzyme called CMG helicase from functioning. To begin manufacturing DNA, the cells enzymes need to initially break down CDT1. “Previously proposed systems for collaborating this shift from the licensing phase of the cell cycle to the shooting phase of the cell cycle have depended on inhibiting licensing aspects,” said Ratnayeke, including that “the system that we identified here is actually the opposite … the licensing aspect CDT1 itself is avoiding the progression of DNA synthesis.”
To confirm their outcomes, the researchers collaborated with colleagues at the Medical Research Council in Cambridge, UK, who discovered that the repressive mechanism can be recapitulated in a simplified system that reproduces the whole DNA synthesis procedure with purified parts in a test tube. “That permitted us to reconstitute all the parts for DNA synthesis, and to prove that CMG helicase is straight hindered by CDT1,” stated Dr. Meyer, who is also a teacher of biochemistry and a member of the Sandra and Edward Meyer Cancer Center at Weill Cornell Medicine.
Since failures in duplication licensing can kill cells or make them cancerous, the results supply a new understanding of cell health and illness. “Future work to recognize mechanistically whats going on with Cdt1 inhibition will offer higher insight into the biophysics of how CMG helicase functions, and will identify particular areas of this complex that can be targeted using drugs,” stated Ratnayeke.
Referral: “CDT1 prevents CMG helicase in early S stage to separate origin licensing from DNA synthesis” by Nalin Ratnayeke, Yasemin Baris, Mingyu Chung, Joseph T.P. Yeeles and Tobias Meyer, 5 January 2023, Molecular Cell.DOI: 10.1016/ j.molcel.2022.12.004.

To resolve this challenging speculative issue, Ratnayeke used computer-aided microscopy to monitor thousands of growing cells simultaneously, catching the replicating cells in the act and analyzing the activities of their licensing and duplication elements.
“Previously proposed mechanisms for coordinating this transition from the licensing phase of the cell cycle to the firing phase of the cell cycle have actually depended on hindering licensing elements,” said Ratnayeke, adding that “the system that we determined here is really the opposite … the licensing element CDT1 itself is preventing the development of DNA synthesis.”

The findings use brand-new insights into cell health and disease as failures in duplication licensing can result in cell death or cancer.
According to a recent study by scientists at Weill Cornell Medicine, a protein that prepares DNA for replication likewise keeps the duplication procedure in check, thus resolving an enduring mystery in biology. The research study was recently released in the journal Molecular Cell.
The cells of human beings and all other higher organisms employ a sophisticated system of checkpoints and licensing proteins to guarantee accurate replication of their genomes prior to division. In preparation for cellular division, licensing proteins bind to specific areas in the DNA, marking them as replication origins. The DNA synthesis stage of the cell cycle only initiates duplication at these designated websites and it only “fires”, or starts, once, according to the current understanding.
That design was missing out on an essential point, though. “The same aspect that is permitting for this licensing to take place is only deteriorated after these duplication origins have fired,” stated senior author Dr. Tobias Meyer, the Joseph Hinsey Professor in Cell and Developmental Biology at Weill Cornell Medicine. “In concept, the cell might pack these licensing machines onto DNA thats currently replicated, so, instead of 2 copies, youre getting 3 or 4 copies of that section of the DNA, and these cells would be expected to lose genome integrity and pass away or become cancerous.”